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Publications

  • Novembre J, Slatkin M. (2009) Likelihood-based inference in isolation-by-distance models using the spatial distribution of low-frequency alleles. Evolution (in press).

  • Alexadner DH, Novembre J, Lange K. (2009) Fast model-based estimation of ancestry in unrelated individuals. Genome Research (in press)

  • Coop G, Pickrell JK, Novembre J, Kudaravalli S, Li J, Absher D, Myers RM, Cavalli-Sforza LL, Feldman MW, Pritchard JK. (2009) The role of geography in human adaptation. PloS Genetics 5:e1000500. [link]

  • Pickrell JK, Coop G, Novembre J, Kudaravalli S, Li J, Absher D, Srinivasan B, Barsh GS, Myers RM, Feldman MW, Prichard JK. (2009) Signals of recent positive selection in a worldwide sample of human populations. Genome Research 19:826-837[link]

  • Auton A, Byrc K, Boyko AR, Lohmueller KE, Novembre J, Reynolds A, Indap A, Wright MH, Degenhardt J, Gutenkunst RN, King KS, Nelson MR, Bustamante, CD. (2009) Global distribution of genomic diversity underscores rich complex history of continental human populations. Genome Research 19:795-803[link][pdf]

  • Novembre J, Johnson T, Bryc K, Kutalik Z, Boyko AR, Auton A, Indap A, King KS, Bergman S, Nelson MR, Stephens M, Bustamante CD. (2008) Genes mirror geography within Europe. Nature 456:98-101. [link][pdf][supp info pdf]

  • Nelson MR, Bryc K, King KS, Indap A, Boyko AR, Novembre J, Maruyama Y, Waterworth DM, Waeber G, Vollenweider P, Oskenberg JR, Hauser SL, Stirnadel H, Kooner JS, Chambers JC, Jones B, Mooser V, Bustamante CD, Rosed AD, Burns DK, Ehm MG, Lai EH. (2008) The Population Reference Sample (POPRES): a resource for population, disease, and pharmacological genetics research. American Journal of Human Genetics 83:347-358 [link][pdf]

  • Reiner AP, Barber MJ, Guan Y, Ridker PM, Lange LA, Chasman DI, Walston JD, Cooper GM, Jenny NS, Rieder MJ, Durda JP, Smith JD, Novembre J, Tracy RP, Rotter JI, Stephens M, Nickerson DA, Krauss RM. (2008) Polymorphisms of the HNF1A Gene Encoding Hepatocyte Nuclear Factor-1alpha are Associated with C-Reactive Protein. American Journal of Human Genetics 82:1193-1201 [pdf]

  • Novembre, J, Stephens, M. (2008) Interpreting principal components analyses of spatial population genetic variation. Nature Genetics 40:646-649[pdf] [supp info pdf]

  • Novembre, J*, Pritchard, JK, Coop, G.* (2007) Adaptive drool in the gene pool. Nature Genetics 39:1188-1190. [pdf]

  • Rosenblum, EB*, Novembre, J.* (2007) Ascertainment bias in spatially structured populations: A case study in the Eastern Fence Lizard. Journal of Heredity 98(4):331-336. [pdf]

  • Novembre, J, Galvani, AP, Slatkin, M. (2005) The geographic spread of the CCR5-Delta32 HIV-resistance mutation. PLOS Biology 3(11):e397. [pdf] [synopsis pdf]

  • Galvani, AP, Novembre, J. (2005) The evolutionary history of the CCR5-Delta32 HIV-resistance mutation. Microbes and Infection 7:302-309. [pdf]

  • Anderson, EC, Novembre, J. (2003) Finding haplotype block boundaries using the minimum description length principle. American Journal of Human Genetics 73(2):336-354.[pdf]

  • Herbeck, J, Novembre, J. (2003) Codon usage patterns in cytochrome oxidase I across multiple insect orders. Journal of Molecular Evolution 56(6):691-701. [pdf]

  • Slatkin, M., Novembre, J. (2003) Appendix to paper by Wall and Herbeck. Journal of Molecular Evolution 56(6):689-690.[pdf]

  • Novembre, J. (2002) Accounting for background nucleotide composition when measuring codon usage bias. Molecular Biology and Evolution 19(8):1390-1394. [pdf]

  • Excoffier, L, Novembre, J, Schneider, S. (2000) SIMCOAL: a general coalescent program for simulation of molecular data in interconnected populations with arbitrary demography. Journal of Heredity 91:506-509. [pdf]

    • * authors contributed equally