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Journal articles
Lloyd-Smith, J. O., George, D., Pepin, K.,
Pitzer, V.E., Pulliam, J., Dobson, A.P., Hudson, P.J., Grenfell, B.T. (In
review) Epidemic dynamics at the
human-animal interface.
Raffel, T.R., Lloyd-Smith, J.O., Sessions,
S.K., Hudson, P.J., Rohr, J.R. (In review) Disentangling drivers of parasite age-intensity and age-distribution
relationships using field data, experiments, and models.
Schreiber, S.J. and Lloyd-Smith, J.O. (2009) Invasion dynamics in
spatially heterogeneous
environments. American
Naturalist.
Polansky, L., de
Valpine, P., Lloyd-Smith, J.O., Getz, W.M. (2009) Likelihood ridges and
multimodality in population growth rate models. Ecology 90: 2313-2320. [PDF]
[Supp.
Info]
Hahn, J.A., Wylie, D., Dill, J., Sanchez, M.,
Lloyd-Smith, J. O., Page-Shafer, K., Getz, W.M. (2009) Potential impact of
vaccination on the hepatitis C virus epidemic in injecting drug users. Epidemics 1: 47-57. [PDF]
Polansky, L., de
Valpine, P., Lloyd-Smith, J.O., Getz, W.M. (2009) Estimating parameters in a generalized model of density
dependence. Theoretical Ecology 1:
221-229. [PDF]
[Supp.
Info]
Sanchez, M.S.,
Lloyd-Smith, J.O., Williams, B.G., Porco, T.C., Ryan, S. J., Borgdorff, M.W,
Mansoer, J., Dye, C., Getz, W.M. (2009)
Incongruent HIV and tuberculosis epidemics in Kenya: Interacting epidemics monitor each other. Epidemics. 1: 14-20. [PDF]
[Supp.
Info]
Auvert, B.,
Marseille, E., Korenromp, E.L., Lloyd-Smith, J., Sitta, R., Taljaard, D.,
Pretorius, C., Williams, B., Kahn, J.G.
(2008) Estimating the resources needed and savings anticipated from
roll-out of adult male circumcision in sub-Saharan Africa.
PLoS
ONE 3: e2679. [PDF]
Lloyd-Smith, J.O., Poss, M., Grenfell, B.T. (2008)
HIV-1/parasite co-infection and the emergence of new parasite strains. Parasitology 135: 795-806. [PDF]
Sanchez, M.S., Lloyd-Smith,
J.O., Porco, T.C., Williams, B.G., Borgdorff, M.W, Mansoer, J., Salomon,
J.A., Getz, W.M. (2008) Impact of HIV
on novel strategies for tuberculosis control.
AIDS 22: 963-972. [PDF]
Lloyd-Smith, J.O., Greig, D., Ghneim, G., Hietala,
S., Palmer, L., St. Leger, J., Grenfell, B.T., Gulland, F.M.D. (2007) Cyclical changes in seroprevalence
of leptospirosis in California
sea lions: endemic and epidemic disease in one host species? BMC Infectious Diseases 7: 125. [PDF]
Graham, A.L., Cattadori, I.M., Lloyd-Smith, J.O.,
Ferrari, M.J., Bjornstad, O.N. (2007) Transmission consequences of
co-infection: cytokines writ large? Trends in Parasitology 23: 284-291. [PDF]
Cross, P.C., Johnson, P.L., Lloyd-Smith,
J.O., Getz, W.M. (2007) Utility
of R0 as a predictor of
disease invasion in structured populations.
Journal of the Royal Society
Interface 4: 315-324. [PDF]
Lloyd-Smith, J.O. (2007) Maximum
likelihood estimation of the negative binomial dispersion parameter for
highly overdispersed datasets, with applications to infectious disease data. PLoS
ONE 2: e180. [PDF]
Salomon, J.A., Lloyd-Smith, J.O., Getz, W.M., Resch, S., Sánchez,
M.S., Porco, T.C., Borgdorff, M.W. (2006) Prospects for advancing tuberculosis
control efforts through novel therapies.
PLoS Medicine 3:
1302-1309. [PDF][Supp.
Info]
Williams, B.G., Lloyd-Smith, J.O., Gouws, E., Hankins, C., Getz, W.M., Dye, C., Hargrove, J., de
Zoysa, I., Auvert, B. (2006) The potential impact of male
circumcision on HIV in sub-Saharan Africa. PLoS
Medicine 3: 1032-1040. [PDF][Supp.
Info]
Bar-David, S., Lloyd-Smith,
J.O., Getz, W.M. (2006)
Dynamics and management of infectious diseases in colonizing
populations. Ecology 87:
1215-1224. [PDF]
Getz, W.M. and Lloyd-Smith, J.O.
(2006) Comment on “On the regulation of populations in mammals, birds, fish
and insects” I. Science 311: 1100.
[available
at Science online]
Lloyd-Smith, J.O.,
Schreiber, S.J., Kopp, P.E., Getz, W.M. (2005) Superspreading and the effect of
individual variation on disease emergence. Nature 438:
355-359. [PDF][Supp.
Info][available at Nature online][News & Views]
Bauch, C.T., Lloyd-Smith, J.O.,
Coffee, M., Galvani, A.P. (2005) Dynamically modeling SARS and other newly emerging respiratory
illnesses: past, present, and future. Epidemiology
16: 791-801. [PDF]
Lloyd-Smith, J.O.,
Cross, P.C., Briggs, C.J., Daugherty, M., Getz, W.M., Latto, J., Sánchez,
M.S., Smith, A.B., Swei, A. (2005)
Should we expect population thresholds for wildlife disease? Trends in Ecology & Evolution
20: 511-519. [PDF]
Cross, P.C., Lloyd-Smith, J.O.,
Johnson, P.L., Getz, W.M. (2005) Dueling time scales of host mixing and
disease recovery determine invasion of disease in structured populations. Ecology Letters 8: 587-595. [PDF]
Cross, P.C., Lloyd-Smith, J.O.,
Getz, W.M. (2005) Disentangling association patterns in fission-fusion
societies using African buffalo as an example. Animal Behaviour 69:
499-506. [PDF]
Porco, T.C., Lloyd-Smith, J.O.,
Gross, K.L., Galvani, A.P. (2005) The effect of treatment on pathogen
virulence. Journal of Theoretical
Biology 233: 91-102. [PDF]
Lloyd-Smith, J.O.,
Getz, W.M., Westerhoff, H.V. (2004) Frequency-dependent incidence in
sexually-transmitted disease models: portrayal of pair-based transmission and
effects of illness on contact behaviour. Proceedings
of the Royal Society, Series B, Biological Sciences 271: 625-634. [PDF]
Cross, P.C., Lloyd-Smith, J.O.,
Bowers, J., Hay, C.T., Hofmeyr, M., Getz, W.M. (2004) Integrating association data and
disease dynamics: an illustration using African Buffalo in Kruger National Park.
Annales Zoologici Fennici 41: 879-892. [PDF]
Lloyd-Smith, J.O.*,
Galvani, A.P.*, Getz, W.M. (2003) Curtailing transmission of severe acute respiratory
syndrome within a community and its hospital. Proceedings of the Royal Society, Series B, Biological Sciences
270, 1979-1989. [PDF]
Book
chapters (peer-reviewed)
Lloyd-Smith, J.O.,
Schreiber, S.J., Getz, W.M.
(2006) Moving beyond averages: Individual-level variation in disease
transmission. In Mathematical studies
on human disease dynamics: Emerging paradigms and challenges, ed. Gumel,
A.B., Castillo-Chavez, C., Mickens, R.E., Clemence, D.P., AMS Contemporary
Mathematics Series, Vol 410, 235-258. [PDF]
Bar-David, S., Lloyd-Smith, J.O., Getz, W.M.
(2006) Infectious disease in spatially
expanding populations: a model for reintroduced species. In Conservation Biology in Asia, ed.
McNeely, J.A., McCarthy, T. M., Smith, A., Olsvig-Whittaker, L.,
Wikramanayake, E.D., Society for Conservation Biology and Resources Himalaya,
Kathmandu, Nepal, 340-362.
Getz, W. M., and Lloyd-Smith, J. O. (2006) Basic methods for modeling
the invasion and spread of contagious disease. In Disease
evolution: Models, concepts and data analyses, ed. Feng, Z., Dieckmann,
U., Levin, S.A. AMS/DIMACS Vol. 71: 87-109.
Getz, W.M., Lloyd-Smith, J.O,
Cross, P.C., Bar-David, S., Johnson, P.L., Porco, T.C., Sánchez, M.S. (In
press) Modeling the invasion and
spread of contagious disease in heterogeneous populations. In Disease evolution: Models, concepts
and data analyses, ed. Feng, Z., Dieckmann, U., Levin, S.A. AMS/DIMACS Vol. 71: 113-144.
Work
in other fields
Crawford, M.A., Bloom, M., Broadhurst, C.L., Schmidt, W.F., Cunnane, S.C.,
Galli, C., Gehbremeskel, K., Linseisen, F., Lloyd-Smith, J., Parkington, J. (1999) Evidence for the unique
function of DHA during the evolution of the modern hominid brain. Lipids 34 supp: S39-47.
Graham, S.J., Stanchev, P.L., Lloyd-Smith,
J.O.A., Bronskill, M.J., Plewes, D.B. (1995) Changes in fibroglandular
volume and water content of breast tissue during the menstrual cycle observed
by MR imaging at 1.5 T. Journal
of Magnetic Resonance Imaging 5:
695-701.
Bloom, M., Linseisen, F., Lloyd-Smith,
J., Crawford, M.A. (1999) Insights from NMR on the functional role of
polyunsaturated lipids in the brain. Proceedings of the 1998 Enrico Fermi
International School of Physics, on “Magnetic Resonance and Brain
Function: Approaches from Physics”, ed. B. Maraviglia, Italian Physical
Society.
*authors contributed equally
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